Ecommerce Accounting Software Pricing Compared: A2X vs Webgility vs Synder vs Bookkeep

The short answer: ecommerce accounting software runs from about $19 to $599 a month for a US seller, and the spread has almost nothing to do with features. It is decided by the meter. Bookkeep bills on annual revenue, from $19. A2X bills per sales channel, from US$29 each. Synder bills on synced transactions, from $52 a month billed annually. Webgility bills on monthly order count and channel count, from $69 billed annually. Link My Books publishes no table at all, only a calculator. Work out which meter your business trips first, then price the tier above where you sit today, because every one of these tools gets more expensive as you grow rather than when you add features.

Last updated August 2026. Every price, limit and trial term below was read off each vendor's own pricing page on August 30, 2026. This category repackages tiers constantly, so treat these as a starting point and confirm on the live page before you sign.

Ecommerce accounting software pricing compared

How much does ecommerce accounting software cost?

For most US sellers it costs $50 to $300 a month. A single-channel Shopify or Amazon store on QuickBooks Online typically lands between $29 and $79. A three-channel seller doing a few thousand orders a month usually lands between $199 and $349. Above roughly 5,000 orders a month, published tiers run out and you are into custom pricing.

The reason quotes vary so much between two businesses of the same size is that no two of these vendors count the same thing. A seller with 400 high-value orders across one channel is cheap on Webgility and expensive on nothing. A seller with 8,000 small orders across four channels is cheap on A2X only if those channels are quiet, and expensive on Synder the moment the transaction count crosses a tier line. Price your own numbers against each meter rather than comparing headline figures.

A2X pricing

A2X publishes US$29 per month as its starting price for Amazon, Shopify, Etsy, eBay and PayPal, and US$79 for Walmart. Two things about that number catch people out. It is per sales channel, so a seller running Shopify and Amazon starts two separate subscriptions rather than one. And inside each channel the price climbs in tiers as monthly order volume rises, so growth moves you up every ladder you are standing on at once.

Worth knowing before you shortlist it: WooCommerce is not on A2X's published channel list, and neither is QuickBooks Desktop. If either is part of your stack, A2X is out on a technicality rather than on price.

Webgility pricing

Webgility publishes two separate ladders, and which one applies depends entirely on your ledger.

The add-ons matter more than the tier names. Going over your order cap costs $10 a month per extra 500 orders. An extra sales channel is $20 a month. Historical Data Migration is $200 one time and Ecommerce Books Reconstruction is $249 one time. Shipping Automation is $50 a month and is included on the Premium and Complete Desktop plans. Free 1:1 onboarding comes with every plan.

Webgility is also the only tool in this comparison that still serves QuickBooks Desktop properly, and one of the few that syncs inventory and pricing back out to your channels rather than only pulling sales in. If keeping stock counts in step across storefronts is a live problem for you, that is a job that usually needs a dedicated inventory forecasting system once you outgrow a sync feature, and it is worth deciding early which side owns those numbers.

Synder pricing

Synder charges by synced transactions per month, not orders and not channels. Checked August 30, 2026 the ladder is Basic $65, Essential $129, Pro $299 and Pro Max $599 on monthly billing, or $52, $103, $240 and $480 billed annually, with a custom Premium tier above. The allowances are 500, 1,000, 10,000 and 20,000 synced transactions a month. There is a 15 day free trial with no credit card required.

Note that Essential and Pro went up with effect from September 1, 2026, from $115 to $129 and from $275 to $299 monthly. Basic and Pro Max held. If you are reading an older comparison, its Synder numbers are stale.

The trap here is the word transactions. A single order can generate several synced records once you count the sale, the fee, the refund and the payout. Sellers routinely find they need Pro at 10,000 rather than Essential at 1,000, which is a jump from $103 to $240 a month on annual billing.

Bookkeep pricing

Bookkeep is the cheapest entry point in this group and the only one metered on revenue. Lite is $19 a month for up to $200K in annual revenue and one sales channel. Starter is $49 for up to $500K. Growth is $99 for up to $2M and unlocks NetSuite, Sage Intacct and Intuit Enterprise Suite. Pro is $199 for up to $5M with five segmented channels and a managed sales tax filing service. Advanced is $499 and Unlimited is $1,199. Annual billing gives two months free, and there is a 14 day trial with no card.

Revenue metering behaves differently from order metering, and it favors opposite businesses. A high-ticket seller doing 200 orders a month at $900 each trips the $2M line fast and pays $99 or more. A low-ticket seller doing 4,000 orders at $18 stays under $1M and pays $49, where an order-metered tool would have charged several hundred.

Link My Books pricing

Link My Books does not publish a price table. Its pricing page is an interactive calculator that asks for monthly orders, from 200 up to 250,000, the number of sales channels, and a currency in GBP, USD or AUD, then returns a figure. Starter, Pro and Premium tiers are named in the copy, with Pro and Premium allowing up to 5 and 10 connected accounts, but no dollar amounts appear on the page.

It supports Amazon, eBay, Shopify, Etsy, Walmart, TikTok Shop, WooCommerce and Square, into Xero or QuickBooks Online, with a 14 day free trial, no card, and 90 days of historical data included. If you want a number you have to run the calculator with your own volumes, which is worth doing because it is the only way to compare it against the four published ladders above.

What is the cheapest ecommerce accounting software?

Bookkeep at $19 a month is the cheapest published entry price, but it is only the cheapest choice for a low-revenue, single-channel seller. Cheapest depends on which meter your business trips first. Here is how three real shapes price out on annual billing:

One caution on the cheapest tier of anything here: the constraint that bites is usually the cap, not the price. Crossing an order cap, a revenue band or a transaction allowance mid-quarter is what turns a $69 subscription into a $349 one, so price the tier that covers your peak month rather than your average.

Does any of this software reconcile your bank account?

No, and it is the most common misunderstanding in this category. Every tool above moves sales activity into your ledger and then checks that what it posted agrees with the channel it came from. That is a real and useful check. It is not bank reconciliation, because it only ever looks at one lane.

Your bank statement carries a lot that no sales channel ever touched: ACH batches, wires, transfers between your own accounts, corporate card spend, payroll runs, vendor bill payments, loan draws and a Stripe payout that lands three days late and net of fees. A channel-shaped tool cannot see any of it. So sellers who buy one of these tools and still cannot close the month are usually not missing a feature, they bought a category that was never pointed at the problem.

That whole-statement job belongs to ecommerce payment reconciliation software, which connects the bank, the cards, the processors and the ledger read-only and proves the two sides agree. Reconciler does that from a published $49 a month with no order meter, no revenue band and no per-channel fee, and it writes a plain English reason under every match it makes. Upload a statement at the top of this page to see what that looks like on your own data.

Which should you buy?

• You are on QuickBooks Desktop. Webgility, and it is close to the only current option. See the Webgility pricing and alternatives breakdown for the full Desktop ladder.
• You want one clean journal entry per payout. A2X. Compare it against Webgility order by order in the A2X vs Webgility pricing comparison, or read the A2X alternatives breakdown.
• You want transaction-level bookkeeping automated, not just sales posted. Synder. The Synder alternatives and pricing page has the current tier table.
• You are low revenue, single channel, and price sensitive. Bookkeep at $19, and revisit when revenue crosses $500K.
• Your sales already post fine and the bank still will not tie out. None of them. That is reconciliation software, and the best account reconciliation software roundup covers the shortlist.

Can you use ecommerce accounting software and reconciliation software together?

Yes, and for most multi-channel sellers over about $2M that is the normal setup rather than a compromise. One tool gets store activity into the ledger accurately. The other proves the ledger agrees with the bank, including everything that never came from a store. They read different data and only one of them writes, so they cannot fight over your books.

Do these prices include sales tax filing?

Mostly no. Bookkeep is the exception: its Pro tier at $199 a month includes a managed sales tax filing service, limited to the US and to Shopify, Toast and Square POS. The others calculate and post tax amounts into your ledger but do not file returns, so budget a separate filing tool or a preparer on top of whichever subscription you pick.

What should you check before you sign?

Four things, in this order. What the meter counts, because that is the whole bill. What your peak month does to that meter, not your average month. Whether your exact ledger is supported, since QuickBooks Desktop, NetSuite and Sage Intacct each knock out a different subset of this list. And what the historical catch-up costs, because migration and books reconstruction are quoted separately by every vendor that offers them and that is usually where the real first-month expense sits.